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autoconf < needs updating (port has 2.62) (=> 'devel/autoconf262')
php5 < needs updating (port has 5.2.6_1)
php5-mbstring < needs updating (port has 5.2.6_1)
php5-pcre < needs updating (port has 5.2.6_1)
php5-session < needs updating (port has 5.2.6_1)
php5-xml < needs updating (port has 5.2.6_1)

autoconfのディレクトリが変わってうまくupgradeしてくれない
portupgrade の オプションで -o を指定したらよいらしい
主なオプションは 参考ページをみた

ja-samba < needs updating (port has 3.0.31_1,1)
ruby < needs updating (port has 1.8.6.287,1)

ja-samba < needs updating (port has 3.0.30_1,1)

portupgrade-2.4.3_2,2 < needs updating (port has 2.4.6,2)

ja-samba-3.0.28_2,1 < needs updating (port has 3.0.30,1)

clamav-0.93.1_2 < needs updating (port has 0.93.3)
sudo-1.6.9.15_1 < needs updating (port has 1.6.9.17)

apache-2.2.8 < needs updating (port has 2.2.9)
ruby-1.8.6.111_3,1 < needs updating (port has 1.8.6.111_4,1)
ruby18-bdb-0.6.2 < needs updating (port has 0.6.4)

clamav-0.93.1 < needs updating (port has 0.93.1_2)
dhcp6-20070507 < needs updating (port has 20080615)
ruby-1.8.6.111_2,1 < needs updating (port has 1.8.6.111_3,1)
tnef-1.4.3 < needs updating (port has 1.4.4)

postgresql-client-8.2.7_1 < needs updating (port has 8.2.9)
postgresql-server-8.2.7_1 < needs updating (port has 8.2.9)

gettext-0.16.1_3 < needs updating (port has 0.17_1)
gmake-3.81_2 < needs updating (port has 3.81_3)
help2man-1.36.4_1 < needs updating (port has 1.36.4_2)
ja-samba-3.0.28_1,1 < needs updating (port has 3.0.28_2,1)
libtool-1.5.24 < needs updating (port has 1.5.26)
m4-1.4.9,1 < needs updating (port has 1.4.11,1)
p5-gettext-1.05_1 < needs updating (port has 1.05_2)
php5-pgsql-5.2.6 < needs updating (port has 5.2.6_1)
popt-1.7_4 < needs updating (port has 1.7_5)
postgresql-client-8.2.7 < needs updating (port has 8.2.7_1)
postgresql-server-8.2.7 < needs updating (port has 8.2.7_1)
wget-1.11.2 < needs updating (port has 1.11.2_1)

いままでは、個別にupgradeしていたけれど
portupgrade -ri \*
で、１回のコマンドで行った
まだ、すべてのupgrade は終わっていないけれど掲載しとく